Classification of gene mutations in a children’s cancer may point to improved treatments

By | November 11, 2014

“Some mutations are more important than others,” said Ya�l P. Moss�, MD, a pediatric oncologist at The Children’s Hospital of Philadelphia, and a co-leader of the new study published online today in the journal Cancer Cell. “By integrating biochemistry into our clinical strategies, we can better match a patient’s specific ALK-mutation profile with an optimum treatment.” Moss� is also an assistant professor of Pediatrics in the Perelman School of Medicine, University of Pennsylvania.

“Understanding the specific mutations that trigger signals in cell receptors to stimulate cell growth will help us identify biomarkers for specific subtypes of neuroblastoma,” said study co-leader Mark A. Lemmon, PhD, professor and chair of Biochemistry and Biophysics at Penn. Lemmon’s research focuses on cell receptors in cancer.

Moss�, Lemmon and their computational collaborator Ravi Radhakrishnan, PhD, an associate professor in the department of Bioengineering at Penn, say their new findings will provide crucial data for a pivotal phase 3 study for patients with ALK-driven high-risk neuroblastoma. This trial will be conducted through the Children’s Oncology Group (COG), a cooperative research organization encompassing over 250 pediatric cancer programs in North America. The COG is supported by the National Cancer Institute.

A solid tumor of the peripheral nervous system, often appearing in the chest or abdomen, neuroblastoma is the most common cancer in infants. It accounts for a disproportionate share of cancer deaths in children, with cure rates lagging behind those for other pediatric cancers.

The current study concentrates on various mutations in ALK, the anaplastic lymphoma kinase gene. Moss� led a team that first discovered in 2008 that an ALK mutation caused a hereditary form of neuroblastoma, and also identified ALK mutations implicated in some non-hereditary neuroblastoma.

Moss� was subsequently able to expedite a phase 1 pediatric trial for neuroblastoma and other ALK-dependent childhood cancers using an existing drug called crizotinib, a molecule that inhibits the ALK protein when it is switched on by some ALK gene mutations. Crizotinib had a stronger anticancer effect against some ALK mutations than in others. In later collaboration with Lemmon, the investigators analyzed the biochemistry of how the two most common ALK mutations responded to crizotinib. The results strongly suggested that higher doses of the drug would be necessary for children with one mutation compared to the other — and that this knowledge could help oncologists define the correct dosage before an initial treatment.

Neuroblastoma is complex, with many subtypes of the disease. The current study explored the full spectrum of neuroblastoma, analyzing DNA from a COG tumor bank drawn from nearly 1,600 patients. The team discovered ALK mutations in 8 percent of the tumors, with a higher rate among tumors from older patients and those with high-risk neuroblastoma. The researchers also investigated which ALK mutations were more sensitive to crizotinib in cell cultures.

“Our computational approach can predict which ALK mutations are activating — that is, which ones drive cancer — and just as importantly, which mutations are not,” said Radhakrishnan. “This will give oncologists a way to avoid overtreating or undertreating each patient, by knowing whether crizotinib or similar ALK inhibitors will be necessary and effective,” added Lemmon. They commented that their analytical method also holds great promise in predicting the behavior of new ALK mutations not yet discovered.

Using crizotinib to inhibit ALK activity is not always effective, because children are often treated previously with other drugs that cause neuroblastoma tumors to develop drug resistance. “Our goal is to leverage our ongoing preclinical work to design a phase 3 clinical trial that will integrate crizotinib into the treatment regimen for newly diagnosed patients, who will be carefully selected according to which ALK mutation their tumor carries,” added Moss�. “Characterizing which patients are likely to benefit from ALK inhibition and treating them upfront before they develop drug resistance may save more children’s lives.”

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